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Understanding Relative Configuration in Molecules

Apr 24, 2025

Lecture on Relative Configuration

Introduction

  • Relative configuration describes the spatial position of atoms/groups relative to others in a molecule.
  • Different rules apply based on the number of substituents.

Case with Two Substituents

  • Focus on substituents around double bonds or rings.
  • Example: Two isomers of a double bond where bromines are on opposite or same sides.
    • Trans configuration: Substituents (e.g., bromines) on opposite sides.
    • Cis configuration: Substituents on the same side.
  • Applies to rings as well:
    • Trans: Bromine atoms on opposite sides of the ring.
    • Cis: Bromine atoms on the same side of the ring.
  • Stability:
    • Trans isomers are generally more stable due to fewer steric interactions.
    • Steric interactions occur when groups' electron clouds overlap, causing repulsion.

Case with More Than Two Substituents

  • More complex assignment of relative configuration:
    • Use Cahn-Ingold-Prelog (CIP) priority rules:
      • Rank by atomic number, then atomic mass, then first point of difference.
      • Multiple bonds count as multiple atoms.
    • Assign priorities to substituents around a double bond (e.g., fluorine > carbon > deuterium > hydrogen).

E/Z Nomenclature

  • E/Z Assignment rather than Cis/Trans for more than two substituents:
    • E (Entgegen): Highest priority groups on opposite sides (like Trans).
    • Z (Zusammen): Highest priority groups on the same side (like Cis).

Example Analysis

  • Example 1:
    • Highest priorities on opposite sides (E configuration).
  • Example 2:
    • Highest priorities on the same side (Z configuration).

Conclusion

  • Understanding relative configuration involves recognizing spatial arrangements and applying CIP rules to assign E/Z based on priority of substituents.