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Molecular Geometry & Acid-Base Chemistry

Aug 5, 2025

Overview

This lecture reviews molecular geometry from general chemistry with a focus on hybridization in organic molecules, then begins an in-depth discussion on acids and bases in organic chemistry, including curved arrow notation and the concept of pKa.

Molecular Geometry & Hybridization

  • sp³ hybridized atoms have tetrahedral geometry with ~109.5° bond angles (e.g., methane).
  • Ammonia (NH₃) has a pyramidal shape with bond angles slightly less than 109° due to lone pairs (~107.3°).
  • Water (H₂O) is bent with bond angles ~104.5°, further reduced by two lone pairs.
  • VSEPR Theory explains these shapes and lone pair effects on bond angles.
  • sp² hybridized atoms have trigonal planar geometry with ~120° bond angles (e.g., ethene, methyl carbocation).
  • Methyl carbocation (CH₃⁺) is planar with a vacant p orbital orthogonal to the plane.
  • sp hybridized atoms have linear geometry with 180° bond angles (e.g., acetylene, acetonitrile).
  • Lone pairs occupy more space and can alter idealized bond angles slightly.

Acids and Bases: Definitions and Reactivity

  • Acids and bases are central to organic chemistry; key to generating electrophiles and nucleophiles.
  • Brønsted-Lowry acid: proton donor; Brønsted-Lowry base: proton acceptor.
  • Acid-base reactions can be shown using curved arrow notation to depict electron flow.
  • Example: HCl reacts with water to form H₃O⁺ (hydronium) and Cl⁻ (chloride), with water acting as base.
  • Similar acid-base reactions occur with organic molecules (e.g., methanol, methyl ammonium ion).

Curved Arrow Notation

  • Arrows start at electron sources (lone pair or bond) and point to where electrons move.
  • Used to illustrate bond breaking and formation in acid-base mechanisms.

Measuring Acidity: pKa

  • pKa = –log(Ka), where Ka is the acid dissociation constant.
  • Lower pKa means a stronger acid; strong acids are fully dissociated, weak acids are partially dissociated.
  • The pKa scale is logarithmic; 1 unit difference = 10× difference in acidity.
  • Example: HCl pKa ≈ –7; methane pKa ≈ +50 (extremely weak acid).

Key Terms & Definitions

  • sp³, sp², sp hybridization — Ways atomic orbitals combine, determining molecular geometry (tetrahedral, planar, linear).
  • VSEPR Theory — Valence Shell Electron Pair Repulsion; predicts molecular shapes based on electron pair repulsion.
  • Brønsted-Lowry Acid/Base — Acid donates a proton (H⁺), base accepts a proton.
  • Conjugate Acid/Base — Species formed after an acid donates or a base accepts a proton.
  • pKa — Negative log of acid dissociation constant (Ka), measures acid strength.
  • Curved Arrow Notation — Symbolizes electron movement in reaction mechanisms.

Action Items / Next Steps

  • Review examples of acid-base reactions using curved arrow notation.
  • Prepare for next lecture: focus on factors affecting acid strength and more examples of acids with varying pKa values.