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Microscopy Overview

Aug 6, 2025

Overview

This lecture introduces microscopy, focusing on types of light microscopes (bright field, compound, and stereo), principles of magnification and resolution, sample preparation, and key applications.

Introduction to Microscopy

  • A microscope is an instrument that magnifies objects too small for the naked eye.
  • Microscopes use lenses and light to reveal fine details of small specimens.
  • Time-lapse imaging captures images at intervals, allowing observation of dynamic biological processes.

Magnification vs. Resolution

  • Magnification enlarges the specimen's image, but resolution measures the ability to distinguish two close points.
  • Higher resolution is achieved with shorter wavelengths of light, as described by the Rayleigh Criterion.
  • Typical resolution limits: 300 nm (dry lens), 200 nm (immersion lens).

Types of Light Microscopy

  • Light microscopy includes bright field, dark field, fluorescence, and more advanced electron microscopes.
  • Bright field microscopy uses transmission of white light to produce contrast.
  • Bright field microscopes: simple (single lens), compound (multiple lenses), stereo (3D imaging).

Bright Field Microscopy: Principles and Parts

  • Uses a light source, condenser, specimen stage, objective lens, and eyepiece.
  • Contrast arises from differences in absorption or scattering within the specimen.
  • Compound microscopes have multiple objective lenses (e.g., 4x, 10x, 40x, 100x) and adjustable diaphragms for optimal illumination.
  • Proper specimen illumination (Kohler illumination) is crucial for clear images.

Sample Preparation and Staining

  • Sample prep involves fixation (preserving structure), permeabilization, and mounting on slides with a cover slip.
  • Microtomes and cryostats cut thin specimen sections for viewing.
  • Staining enhances contrast; common stains include hematoxylin & eosin, Giemsa, and crystal violet.

Objective Lenses and Numerical Aperture

  • Numerical aperture (NA) determines light-gathering/resolving power; higher NA gives better resolution.
  • NA depends on refractive index of imaging medium and angle of accepted light.
  • Shorter wavelength light and higher NA improve microscope resolution.

Compound vs. Stereo Microscopes

  • Compound microscopes: high magnification, observe thin samples, use transmitted light.
  • Stereo microscopes: low magnification, 3D view, suitable for large specimens, do not require fixation/staining.

Applications

  • Bright field: cell/tissue observation, microorganism identification, blood analysis, education, quality control, environmental studies, agricultural and plant sciences.
  • Stereo microscopes: dissection, entomology, botany, paleontology, industrial quality control, gemology.

Key Terms & Definitions

  • Microscope — Instrument for magnifying small specimens.
  • Magnification — Enlargement of an image.
  • Resolution — Ability to distinguish two close points as separate.
  • Bright Field Microscopy — Standard light microscopy method using transmitted white light.
  • Numerical Aperture (NA) — Measure of objective lens's light-gathering ability.
  • Fixation — Preserving tissue structure before microscopy.
  • Microtome — Device for slicing thin sections of specimens.
  • Kohler Illumination — Technique for even, optimal specimen lighting.

Action Items / Next Steps

  • Review diagrams of compound/stereo microscopes and their light paths.
  • Prepare specimen slides using fixation and staining protocols.
  • Read about dark field microscopy for the next session.