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Chemical Structure Basics

Jun 10, 2025

Overview

This lecture covers foundational concepts in chemical structure including Lewis structures, bonding, hybridization, resonance, formal charge, IMFs, functional groups, and IR spectroscopy.

Lewis Structures & Formal Charge

  • Count total valence electrons for all atoms in a molecule.
  • Add electrons for negative charges, subtract for positive charges.
  • Arrange atoms with the least electronegative (except H) in the center.
  • Distribute remaining electrons to fulfill octet rule (8 electrons per atom, except H).
  • Assign leftover electrons to the central atom.
  • Calculate formal charge: (valence electrons) – (non-bonding electrons + ½ bonding electrons).
  • The most stable Lewis structure has the fewest atoms with formal charge, with negative charges on more electronegative atoms.

Octet Rule & Exceptions

  • Most atoms aim for 8 electrons in their valence shell (octet), except hydrogen (2 electrons).
  • Some atoms may violate the octet rule in resonance structures or unstable intermediates.

Hybridization & Molecular Geometry

  • 2 domains: sp, linear geometry.
  • 3 domains: sp2, trigonal planar or bent.
  • 4 domains: sp3, tetrahedral, trigonal pyramidal, or bent.
  • Lone pairs count as electron domains.

Resonance Structures

  • Draw all valid resonance structures by moving π bonds or lone pairs.
  • Most stable resonance structures have complete octets and charges on appropriate atoms.
  • Total charge and atom connectivity must not change between resonance forms.

Constitutional Isomers

  • Molecules with the same molecular formula but different connectivity.
  • Example: C6H12 can form different structural isomers.

Intermolecular Forces (IMFs)

  • Strength order: dispersion (weakest) < dipole-dipole < hydrogen bonding (strongest).
  • Hydrogen bonding occurs between H and N, O, or F.

IR Spectroscopy & Functional Groups

  • O-H (alcohol): 3200–3600 cm⁻¹ (broad).
  • N-H (amine): 3300–3500 cm⁻¹.
  • C=O (carbonyl): 1670–1820 cm⁻¹.
  • C≡C (alkyne): 2100–2260 cm⁻¹.
  • C-H (alkene): 3010–3100 cm⁻¹.
  • Carboxylic acid O-H: 2500–3200 cm⁻¹.

Primary, Secondary, Tertiary Carbons & Nitrogens

  • Primary (1°): attached to one other carbon.
  • Secondary (2°): attached to two carbons.
  • Tertiary (3°): attached to three carbons.
  • For nitrogen, count the number of carbons bonded directly to N.

Key Terms & Definitions

  • Valence Electrons — Electrons in the outermost shell involved in bonding.
  • Octet Rule — Atoms tend to have 8 electrons in their valence shell.
  • Formal Charge — Charge assigned to an atom in a molecule relative to its valence electrons.
  • Hybridization — Mixing of atomic orbitals to form new orbitals (sp, sp², sp³).
  • Electron Domain — A region with shared or unshared electron pairs around a central atom.
  • Resonance — Delocalization of electrons across adjacent atoms, represented by multiple structures.
  • Constitutional Isomers — Compounds with the same formula but different structures.
  • Intermolecular Forces (IMFs) — Forces between molecules affecting physical properties.
  • Functional Group — A group of atoms responsible for characteristic chemical reactions.

Action Items / Next Steps

  • Practice drawing Lewis structures with formal charge and resonance forms.
  • Memorize key IR absorption ranges for major functional groups.
  • Complete assigned homework on drawing and identifying isomers, hybridizations, and predicting IMFs.