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Prokaryotes and Extremophiles

Jul 20, 2025

Overview

This lecture covers the evolutionary history, diversity, adaptability, and culturing challenges of prokaryotes, emphasizing extremophiles and biofilms.

Prokaryotic Evolution and Early Life

  • Prokaryotes were Earth's first cellular life, predating plants and animals by billions of years.
  • Early Earth had little oxygen and harsh conditions like high temperatures, volcanic activity, and strong radiation.
  • Microbial mats, layered sheets of prokaryotes, appeared about 3.5 billion years ago.
  • Stromatolites are fossilized microbial mats, providing physical evidence of ancient life.

The Ancient Atmosphere and Photosynthesis

  • Early atmosphere was anoxic (lacking molecular oxygen), so only anaerobic organisms could survive.
  • Phototrophs, organisms using sunlight for energy, appeared within a billion years of Earth's formation.
  • Cyanobacteria evolved later, producing oxygen and gradually oxygenating the atmosphere.
  • Elevated oxygen enabled more complex life and ozone formation to shield Earth from UV radiation.

Prokaryotic Adaptability and Extremophiles

  • Prokaryotes survive in various environments due to adaptations like cell walls and endospore formation.
  • Extremophiles are prokaryotes that thrive under extreme conditions (e.g., acidity, temperature, salt, radiation).
  • Types include acidophiles (low pH), alkaliphiles (high pH), thermophiles (hot), psychrophiles (cold), halophiles (salty), and osmophiles (high sugar).
  • Example: Halophilic prokaryotes live in the Dead Sea, tolerating high salt, divalent ions, and acidic pH.

Culturing Prokaryotes and Unculturable States

  • Culturing prokaryotes requires specific nutrients and conditions; most prokaryotes are unculturable in labs.
  • Over 99% of prokaryotes remain unculturable due to unknown or complex requirements.
  • Some become temporarily unculturable by entering a dormant, viable-but-non-culturable (VBNC) state under stress.
  • Presence of unculturable prokaryotes is detected using molecular techniques like PCR.

Biofilms and Prokaryotic Communities

  • Prokaryotes often form biofilms: sticky microbial communities held in a matrix of secreted substances.
  • Biofilms attach to surfaces, facilitating survival and resistance to antibiotics and disinfectants.
  • Biofilm development occurs in five stages: attachment, irreversible attachment, maturation I, maturation II, and dispersal.
  • Biofilms are difficult to eliminate and play roles in disease, industry, and household contamination.

Key Terms & Definitions

  • Prokaryote — Single-celled organism lacking a membrane-bound nucleus, including bacteria and archaea.
  • Microbial mat — Multi-layered sheet of prokaryotes, often found at material interfaces.
  • Stromatolite — Layered sedimentary structure formed by mineral precipitation in microbial mats.
  • Extremophile — Organism adapted to live in extreme environmental conditions.
  • Endospore — Dormant, tough, non-reproductive structure produced by some bacteria for survival.
  • Halophile — Organism that thrives in high-salt environments.
  • VBNC state — Viable-but-non-culturable, a dormant state where prokaryotes survive stress but can't be cultured.
  • Biofilm — Community of microorganisms in a self-produced matrix attached to a surface.
  • Exopolysaccharide (EPS) — Sugar-rich matrix secreted by biofilm-forming microbes.

Action Items / Next Steps

  • Review the table of extremophiles and their growth conditions.
  • Consider why bacteria in biofilms resist antibiotics more than free-living bacteria.
  • Prepare for discussion or quiz on prokaryotic diversity and biofilm ecology.