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Differential Microbial Stains 2/9

Aug 16, 2025

Overview

This lecture reviews the main types of differential (diagnostic) stains used in microbiology to identify and characterize microorganisms based on their structural features.

Differential Stains Overview

  • Differential stains provide information about microbial cell structure, not just color for visibility.
  • Common differential stains include Gram, acid-fast, spore (endospore), flagella, and capsule stains.

Gram Stain

  • The Gram stain is the first and most important stain used to classify an unknown organism.
  • Gram-positive cells have thick peptidoglycan walls and appear purple after staining.
  • Gram-negative cells have thin peptidoglycan walls and a lipid outer membrane, appearing red or pink.
  • Gram stain method: know the specific stains and their order (details covered in a separate video).

Acid-Fast Stain

  • Acid-fast stain identifies organisms with waxy cell walls containing mycolic acid.
  • Mainly used for Mycobacterium (e.g., M. tuberculosis, M. leprae) and Nocardia species.
  • Acid-fast positive cells stain red; negative cells stain blue.
  • Typical stains: Kinyoun’s carbol fuchsin, acid-alcohol decolorizer, and methylene blue counterstain.

Spore (Endospore) Stain

  • Used to detect spore-forming bacteria, especially Bacillus and Clostridium genera.
  • Spores appear green due to malachite green staining; vegetative cells counterstained with safranin.
  • Useful for identifying dangerous spore-formers like C. difficile, C. tetani, and B. anthracis.

Flagella Stain

  • Highlights bacterial flagella, which are used for movement.
  • A mordant is used to thicken flagella so they become visible under the microscope.
  • Helps to distinguish motile organisms.

Capsule Stain (Negative Stain)

  • Capsule stains cannot directly color the capsule, so the background and cell are stained instead.
  • Capsules appear as clear halos around stained cells due to the negative staining technique.

Key Terms & Definitions

  • Differential stain β€” a stain that distinguishes between cell types or parts based on chemical or structural differences.
  • Gram-positive β€” bacteria with thick peptidoglycan cell walls that stain purple.
  • Gram-negative β€” bacteria with thin peptidoglycan walls and outer membrane, stain red/pink.
  • Acid-fast β€” describes bacteria with waxy cell walls (mycolic acid) that retain certain stains despite acid-alcohol wash.
  • Spore (endospore) β€” a tough, dormant structure formed by some bacteria for survival.
  • Mordant β€” a substance used to fix or intensify stains on cells.
  • Negative stain β€” stains the background, not the target organism or structure.

Action Items / Next Steps

  • Study the specific staining procedures for the Gram stain.
  • Review related videos on Gram stain and bacterial anatomy.