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Organic Molecule Representations

Sep 9, 2025

Overview

This lecture covers the main methods for representing organic molecules, introduces their structural rules, and reviews important functional groups and their classification.

Molecular Representations

  • The molecular formula lists atom types and counts (e.g., C₃H₈O for isopropyl alcohol), but not structure.
  • The condensed structure shows connectivity (e.g., (CH₃)₂CHOH), grouping repeated units.
  • The partially condensed structure draws some bonds and lone pairs for clarity.
  • The Lewis structure fully expands all atoms, bonds, and lone pairs, giving the most detail.
  • The zigzag (bond-line) structure simplifies drawing by using lines and vertices for carbon atoms, omitting most hydrogens.

Rules for Drawing Structures

  • Carbon atoms must have four bonds.
  • Hydrogen atoms can only have one bond.
  • Oxygen atoms typically form two or three bonds.
  • Halogens (F, Cl, Br, I, denoted X) form only one bond.
  • Carbons cannot exceed four bonds ("Texas carbon" with five bonds is not allowed).
  • In zigzag structures, hydrogens bonded to carbon are implied; hydrogens on heteroatoms must be drawn.

Converting Between Structures

  • Each vertex or endpoint in a zigzag represents a carbon atom.
  • All implied hydrogens should be mentally counted to ensure each carbon has four bonds.
  • Groups in parentheses in condensed structures attach to the carbon immediately before them.
  • Practice converting structures in both directions to build proficiency.

Common Structural Groups and Naming

  • Methyl group: CH₃
  • Ethyl group: CH₂CH₃
  • Alkanes: only C and H, all single bonds.
  • Rings: Cycloalkanes have carbons arranged in a ring (e.g., cyclohexane, cyclopentane).
  • Benzene: six-membered ring with alternating double bonds, often drawn with a circle to represent delocalization.

Functional Groups

  • Alkyl halide: Carbon chain (R) bonded to a halogen (X), generic formula RX.
  • Alkane: Only C and H with single bonds.
  • Alkene: Contains C=C double bond, generic formula R₂C=CR₂.
  • Alkyne: Contains C≡C triple bond, generic formula R–C≡C–R.
    • Terminal alkyne: triple bond at molecule’s end (R = H).
    • Internal alkyne: triple bond between two carbons (both R = alkyl).

Key Terms & Definitions

  • Condensed structure — representation grouping atoms, sometimes with parentheses, to show connectivity.
  • Lewis structure — full expansion of all atoms, bonds, and lone pairs.
  • Zigzag/bond-line structure — lines and vertices denote carbon atoms, hydrogens on carbons are omitted.
  • Methyl group — CH₃ unit.
  • Ethyl group — CH₂CH₃ unit.
  • Alkane — saturated hydrocarbon with only single bonds.
  • Alkene — hydrocarbon with at least one double bond.
  • Alkyne — hydrocarbon with at least one triple bond.
  • Cycloalkane — saturated hydrocarbon ring.
  • Benzene — six-membered aromatic ring with alternating double bonds.
  • Functional group — atom/group imparting specific chemical properties to a molecule.
  • Alkyl halide — compound with a halogen directly attached to an alkyl group.

Action Items / Next Steps

  • Practice drawing molecules in all representations (condensed, Lewis, zigzag).
  • Memorize key functional groups and their generic formulas.
  • Use flashcards to learn group names and structures.
  • Read textbook tables summarizing functional groups.