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Exploring DNA Replication and Applications

May 12, 2025

IB Biology: Continuity and Change - DNA Replication

Introduction

  • Focus on DNA replication at the molecular level.
  • DNA replication is akin to making an identical copy of a painting, but with the DNA molecule.

Purpose of DNA Replication

  • Growth and reproduction: Essential for organism growth and reproduction.
  • Origin: DNA is inherited from parents, mixed from both maternal and paternal chromosomes.
  • Essential for cell division: Supports growth from a single cell to trillions of cells.

Semiconservative Process

  • Semiconservative replication: Each new DNA molecule consists of one original strand and one new strand.
  • Template requirement: The original strand acts as a template for assembling the new complementary strand.
  • Base pairing rules: Adenine pairs with thymine, cytosine pairs with guanine.

Molecular Mechanism of DNA Replication

  1. Unwinding of DNA
    • Helicase enzyme: Separates the two DNA strands by breaking hydrogen bonds.
  2. Complementary Strand Synthesis
    • DNA Polymerase: Adds new complementary bases to the template strand.
    • Multiple DNA polymerases work simultaneously.

Laboratory Replication: PCR

  • Polymerase Chain Reaction (PCR): Artificial replication of DNA in a lab setting.
  • Machine used: Thermal cycler.
  • Key components: Free nucleotides, primers, Taq polymerase.
  • PCR Steps:
    1. Denaturation: Heating DNA to separate strands.
    2. Annealing: Cooling to allow primers to bind to DNA.
    3. Extension: Taq polymerase extends the DNA, adding nucleotides.
  • Exponential increase: From 1 to millions of DNA copies.
  • Used in virus identification (e.g., COVID-19 testing).

Application: Gel Electrophoresis

  • Purpose: Separates DNA fragments by size.
  • Process:
    • DNA samples loaded in gel.
    • Electric current moves DNA towards the positive electrode.
    • Smaller fragments move faster and further than larger ones.
  • Use of DNA ladder: For comparison with known DNA lengths.

Applications of PCR and Gel Electrophoresis

  • DNA Profiling: Identification based on DNA bands.
    • Used in criminal investigations and paternity cases.
    • Related individuals share similar DNA profiles.

Importance for IB Exam

  • Understanding of PCR and gel electrophoresis is crucial for the IB Biology curriculum.