⚛️

Understanding the Pyruvate Dehydrogenase Complex

Apr 7, 2025

Pyruvate Dehydrogenase Complex (PDH Complex)

Overview

  • Location: Inner mitochondrial membrane
  • Molecular weight: 9 x 10^6
  • Function: Converts pyruvate from aerobic glycolysis into acetyl coenzyme A, linking glycolysis to the citric acid cycle
  • Reaction type: Irreversible oxidative decarboxylation

Components

  • Enzymes:
    • Pyruvate dehydrogenase (with TPP as a coenzyme)
    • Dihydrolipoyl transacetylase
    • Dihydrolipoyl dehydrogenase
  • Coenzymes:
    • Thiamine pyrophosphate (Vitamin B1)
    • FAD (Vitamin B2)
    • NAD (Vitamin B3)
    • Coenzyme A (Vitamin B5)
    • Lipoic acid

Reaction Sequence

  1. Decarboxylation:
    • Pyruvate dehydrogenase with TPP decarboxylates pyruvate to hydroxyethyl thiamine pyrophosphate.
  2. Conversion & Transfer:
    • Dihydrolipoyl transacetylase converts hydroxyethyl TPP to acetyllipoamide and transfers the acetyl group to CoA, forming acetyl CoA.
  3. Regeneration of Coenzymes:
    • Dihydrolipoyl dehydrogenase regenerates oxidized lipoamide by transferring electrons to FAD, forming FADH2.
    • FADH2 transfers electrons to NAD+, forming NADH + H+.
  4. ATP Production:
    • NADH + H+ enters the respiratory chain, yielding 2.5 ATP.
    • Total 5 ATP are produced per PDH cycle from two moles of pyruvate.

Regulation

  • End-product inhibition
  • Phosphorylation state:
    • Active as dephosphorylated enzyme
    • Inactive as phosphorylated enzyme
  • Promotors:
    • PDH phosphatase (activated by calcium, magnesium, insulin)
    • PDH kinase (activated by ATP, NADH, acetyl CoA; inhibited by NAD+, CoA, pyruvate)

Clinical Applications

  • Arsenic Poisoning:
    • Arsenite inhibits PDH and alpha-ketoglutarate dehydrogenase by binding to lipoic acid's sulfhydryl group.
  • Lactic Acidosis:
    • Caused by PDH deficiency, leading to excess pyruvate converting to lactic acid.

Metabolic Notes

  • Carbohydrate to Fat Conversion:
    • Pyruvate (from carbohydrates) converts to acetyl CoA (mainly from fats)
    • Excess carbohydrates can form fats, but fats cannot convert to carbohydrates due to the irreversible nature of PDH reaction, except glycerol and propionic acid which can be converted to glucose.