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Foundations of Biological Chemistry

Sep 1, 2024

Chemistry Review Lecture

Introduction

  • Understanding chemistry is essential for grasping how molecules interact in living beings.
  • Metabolism and biochemistry involve numerous chemical reactions within cells.
  • Focus on sodium chloride (table salt) as an example.
    • Composed of sodium (a toxic metal) and chlorine (a poisonous gas).
    • Forms an ionic compound, sodium chloride, which is safe to consume.

Chemical Bonds

  • Chemical bonds form molecules when atoms interact, either by sharing or transferring electrons.
  • *Types of Bonds:
    • Covalent Bonds:
      • Formed by sharing a pair of valence electrons.
      • Example: Two hydrogen atoms share electrons to form H2 (a single bond).
      • Double bonds involve sharing two pairs of electrons (e.g., oxygen molecules, O2).
    • Hydrogen Bonds:
      • Occur in polar molecules like water due to electronegativity differences.
      • Oxygen in H2O is more electronegative than hydrogen, leading to a polar molecule with partial charges.
      • Result in hydrogen bonds between water molecules.
    • Ionic Bonds:
      • Occur between oppositely charged ions (e.g., sodium chloride).
      • Sodium (positive) and chlorine (negative) form a stable ionic compound.***

Organic and Inorganic Compounds

  • Organic Compounds:
    • Carbon-based molecules such as carbohydrates, fats, proteins, and nucleic acids.
  • Inorganic Compounds:
    • Include water, salts, and certain acids/bases.
    • Water is crucial as it makes up 60-80% of cells and maintains homeostasis.

Properties of Water

  • High Heat Capacity and Vaporization:
    • Requires substantial energy to change temperature or vaporize.
    • Aids in homeostasis by resisting temperature changes.
  • Hydrophilic vs. Hydrophobic:
    • Hydrophilic substances (e.g., salts) dissolve easily in water.
    • Hydrophobic substances (e.g., oils) do not dissolve, leading to separation.
  • Cohesion:
    • Water molecules stick together, aiding processes like plant water uptake.
    • High surface tension supports objects like water striders.
  • Density of Ice:
    • Ice is less dense than water due to a specific crystal lattice, allowing it to float, which is ecologically important.

Carbon-Based Life

  • Carbon's ability to form four stable bonds makes it versatile, leading to diverse compounds.
  • Functional Groups:
    • Different properties arise from various attachments to carbon skeletons (e.g., amino and carboxy groups).

Macromolecules

  • Types: Proteins, Carbohydrates, Lipids, Nucleic Acids
  • Polymers and Monomers:
    • Polymers are chains of repeating monomers.
    • Example: Proteins are polypeptides formed from amino acid monomers.
  • Polymerization and Hydrolysis:
    • Polymerization involves condensation reactions (water released when forming bonds).
    • Hydrolysis involves breaking bonds with water.

Conclusion

  • This lecture provides foundational knowledge important for understanding biological chemistry.
  • Upcoming lectures will delve deeper into carbohydrates and other macromolecules.