Exploring Enzymatic Activity in the Lab

Oct 10, 2024

Lab on Enzymatic Activity

Safety Precautions

  • Wear goggles and gloves throughout the lab.

Learning Goals

  • Practice collecting and analyzing data.
  • Focus on the enzyme-substrate hypothesis model.
    • Enzymes and substrates interact to lower activation energy.
    • Investigate how various conditions affect reaction rates.
  • Write a lab report on findings over the next two weeks.

Understanding Enzymes

  • Enzymes are proteins made up of amino acids.
    • Primary structure: order of amino acids, determined by DNA.
    • Secondary structure: folds into beta-pleated sheets or alpha helices.
    • Tertiary structure: further folding of secondary structures.
    • Quaternary structure: combination of multiple tertiary structures.
  • Enzymes have active sites specific to substrates.
    • Binding causes conformational change in enzyme shape.
    • Catalase enzyme and hydrogen peroxide substrate will be studied.

Catalase and Hydrogen Peroxide

  • Found in peroxisomes.
    • Breaks down hydrogen peroxide, a by-product of fatty acid metabolism.
    • Converts it into water and oxygen gas.
  • Role of enzymes:
    • Bind substrates and lower activation energy.
    • Stress bonds or orient substrates for reaction.
    • Enzymes remain unchanged post-reaction.
  • Catalase:
    • Composed of four polypeptide chains.
    • Converts millions of peroxide molecules into water and oxygen per second.

Experiment Setup

  • Use a pressure probe attached to a cork.
  • Mix peroxide with yeast (model organism like human cells).
    • Yeast has a nucleus and organelles similar to human cells.
    • Contains catalase.
  • Record pressure change rate.
  • Investigate effects of:
    • Substrate concentration.
    • Temperature.
    • pH.

Week 2 Experiment: Focus on Temperature

  • Test effects of temperature on reaction rate.
  • Room temperature as control.
  • Temperature range: up to 60°C (biologically relevant limit).
  • Methods:
    • Incubate yeast and peroxide at different temperatures.
    • Use temperature probes and thermometers.
    • Stagger incubation times.

Equipment and Procedures

  • Heat blocks for heating; ice baths for cooling.
  • Instructions for using heat blocks:
    • Add water for heat transfer.
    • Power unit on.
    • Set target temperature using buttons on the unit.
    • Wait for flashing to stop, press Start.
    • Unit heats to target temperature.

Additional Resources

  • Written instructions and video guide for heat block use.